Tools and Methods



The Internet Analysis Tools Registry The Internet Analysis Tools Registry
A listing of 157 image analysis tools available to the neuroscience community, hosted by the Center for Morphometric Analysis, Charlestown, MA
NeuroNames Ontologies NeuroNames Ontologies: Standard Names and Synonyms
This section offers the NeuroNames nomenclature of CNS (brain and spinal cord) structures with Standard Terms, Synonyms and URLs to pages in BrainInfo with definitions and illustrations of structures. The nomenclature is available for download in XML and Excel formats.
Macaque Atlas Templates Macaque Atlas Templates for Warping to MRI and PET Scans
Use these templates to locate boundaries of structures not visible in MRI or PET scans. Follow instructions to download templates into an image-processing application such as PhotoShop.
Macaque Atlas Templates Macaque Atlas Templates for Mapping
Download these templates to map data for publication or web display. Follow instructions to download templates into an image-processing application such as PhotoShop.
Atlas of the Macaque Brain Print Your Own Stereotaxic Atlas of the Macaque Brain
Printable images of coronal sections taken at 1mm intervals and referenced stereotaxically to the bicommissural line.
Neuroanatomical Methods Neuroanatomical Methods
Methods for creating a 3-D brain atlas include perfusion with methylene blue, conventional transcardiac perfusion technique, and a transcarotid method to obtain a fixed brain while leaving other tissues fresh for distribution.


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